BioConductor

affyPLM 1.52.1

Methods for fitting probe-level models

Released May 5, 2017 by Ben Bolstad

This package can be loaded by Renjin but 11 out 13 tests failed.

Dependencies

BiocGenerics 0.22.1 preprocessCore 1.38.1 Biobase 2.36.2 gcrma 2.48.0 zlibbioc 1.22.0 affy 1.54.0

A package that extends and improves the functionality of the base affy package. Routines that make heavy use of compiled code for speed. Central focus is on implementation of methods for fitting probe-level models and tools using these models. PLM based quality assessment tools.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>affyPLM</artifactId>
    <version>1.52.1-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:affyPLM')

Test Results

This package was last tested against Renjin 0.8.2523 on Nov 12, 2017.

Source

R
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Release History