BioConductor

affyQCReport 1.58.0

QC Report Generation for affyBatch objects

Released Apr 30, 2018 by Craig Parman

This package can be loaded by Renjin but all tests failed.

Dependencies

affy 1.58.0 Biobase 2.40.0 genefilter 1.62.0 lattice 0.20-35 RColorBrewer 1.1-2 xtable 1.8-2 affyPLM 1.56.0 simpleaffy 2.56.0

This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>affyQCReport</artifactId>
    <version>1.58.0-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:affyQCReport')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 27, 2018.