BioConductor

affypdnn 1.46.0

Probe Dependent Nearest Neighbours (PDNN) for the affy package

Released Sep 22, 2009 by H. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).

This package can be loaded by Renjin but 4 out 8 tests failed.

Dependencies

affy 1.50.0

The package contains functions to perform the PDNN method described by Li Zhang et al.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>affypdnn</artifactId>
    <version>1.46.0-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:affypdnn')

Test Results

This package was last tested against Renjin 0.8.2346 on Mar 19, 2017.

Source

R

Release History