annmap 1.18.0

Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.

Released Sep 14, 2011 by Tim Yates

This package can be loaded by Renjin but 11 out 12 tests failed.


DBI 0.7 BiocGenerics 0.22.1 GenomicRanges 1.28.6 RMySQL digest 0.6.12 lattice 0.20-35 Biobase 2.36.2 IRanges 2.10.5 Rsamtools 1.28.0 genefilter 1.58.1

annmap provides annotation mappings for Affymetrix exon arrays and coordinate based queries to support deep sequencing data analysis. Database access is hidden behind the API which provides a set of functions such as genesInRange(), geneToExon(), exonDetails(), etc. Functions to plot gene architecture and BAM file data are also provided. Underlying data are from Ensembl.



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    <name>bedatadriven public repo</name>

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Test Results

This package was last tested against Renjin 0.8.2523 on Nov 12, 2017.



Release History