BioConductor

attract 1.24.0

Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape

Released Mar 15, 2016 by Jessica Mar

This package cannot yet be used with Renjin it depends on other packages which are not available: reactome.db, org.Hs.eg.db, Biobase 2.32.0, limma 3.28.21, GOstats 2.38.1, AnnotationDbi 1.34.4, and KEGGREST 1.12.2

Dependencies

AnnotationDbi 1.34.4 Biobase 2.32.0 GOstats 2.38.1 KEGGREST 1.12.2 limma 3.28.21 cluster 2.0.3

This package contains the functions to find the gene expression modules that represent the drivers of Kauffman's attractor landscape. The modules are the core attractor pathways that discriminate between different cell types of groups of interest. Each pathway has a set of synexpression groups, which show transcriptionally-coordinated changes in gene expression.

Source

R

Release History