BioConductor

diffloop 1.8.0

Identifying differential DNA loops from chromatin topology data

Released Apr 17, 2018 by Caleb Lareau

This package cannot yet be used with Renjin it depends on other packages which are not available: dplyr 0.7.6, rtracklayer 1.40.5, and data.table 1.11.4

Dependencies

rtracklayer 1.40.5 data.table 1.11.4 dplyr 0.7.6 statmod 1.4.30 GenomeInfoDb 1.16.0 matrixStats 0.54.0 foreach 1.4.4 S4Vectors 0.18.3 plyr 1.8.4 edgeR 3.22.3 reshape2 1.4.3 Biobase 2.40.0 ggplot2 3.0.0 pbapply 1.3-4 GenomicRanges 1.32.6 biomaRt 2.36.1 Sushi 1.18.0 IRanges 2.14.10 limma 3.36.2 locfit 1.5-9.1 readr 1.1.1

A suite of tools for subsetting, visualizing, annotating, and statistically analyzing the results of one or more ChIA-PET experiments or other assays that infer chromatin loops.

Source

R

Release History