BioConductor

gaga 2.26.0

GaGa hierarchical model for high-throughput data analysis

Released Jun 14, 2015 by David Rossell

This package can be loaded by Renjin but 3 out 9 tests failed.

Dependencies

Biobase 2.40.0 coda 0.19-1 EBarrays 2.44.0 mgcv 1.8-24

Implements the GaGa model for high-throughput data analysis, including differential expression analysis, supervised gene clustering and classification. Additionally, it performs sequential sample size calculations using the GaGa and LNNGV models (the latter from EBarrays package).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>gaga</artifactId>
    <version>2.26.0-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:gaga')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 26, 2018.