BioConductor

geNetClassifier 1.20.0

Classify diseases and build associated gene networks using gene expression profiles

Released Apr 17, 2018 by Sara Aibar

This package can be loaded by Renjin but 22 out 32 tests failed.

Dependencies

Biobase 2.40.0 EBarrays 2.44.0 minet 3.38.0 e1071 1.7-0

Comprehensive package to automatically train and validate a multi-class SVM classifier based on gene expression data. Provides transparent selection of gene markers, their coexpression networks, and an interface to query the classifier.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>geNetClassifier</artifactId>
    <version>1.20.0-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:geNetClassifier')

Test Results

This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.