BioConductor
geneClassifiers 1.4.0
Application of gene classifiers
Released Dec 11, 2017 by R Kuiper
This package can be loaded by Renjin but 20 out 24 tests failed.
Dependencies
Biobase 2.40.0 BiocGenerics 0.26.0
This packages aims for easy accessible application of classifiers which have been published in literature using an ExpressionSet as input.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml
file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies> <dependency> <groupId>org.renjin.bioconductor</groupId> <artifactId>geneClassifiers</artifactId> <version>1.4.0-b2</version> </dependency> </dependencies> <repositories> <repository> <id>bedatadriven</id> <name>bedatadriven public repo</name> <url>https://nexus.bedatadriven.com/content/groups/public/</url> </repository> </repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.bioconductor:geneClassifiers')
Test Results
This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.
- bracket-methods-examples
- dim-methods-examples
- getBatchCorrection-methods-examples
- getCitations-methods-examples
- getClassifications-methods-examples
- getClassifier-methods-examples
- getDecisionBoundaries-methods-examples
- getDescription-methods-examples
- getEventChain-methods-examples
- getIntercept-methods-examples
- getMeans-methods-examples
- getName-methods-examples
- getNormalizationMethod-methods-examples
- getProbeNames-methods-examples
- getScores-methods-examples
- getSds-methods-examples
- getTargetValue-methods-examples
- getTrainingData-methods-examples
- getWeightingType-methods-examples
- getWeights-methods-examples
- runClassifier-methods-examples
- setNormalizationMethod-methods-examples
- showClassifierList-methods-examples
- testthat