BioConductor

genefu 2.12.0

Computation of Gene Expression-Based Signatures in Breast Cancer

Released Oct 28, 2015 by Benjamin Haibe-Kains

This package can be loaded by Renjin but 4 out 71 tests failed.

Dependencies

biomaRt 2.36.1 iC10 1.4.2 AIMS 1.12.0 mclust 5.4.1 survcomp 1.30.0 limma 3.36.2 amap 0.8-16

Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>genefu</artifactId>
    <version>2.12.0-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:genefu')

Test Results

This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.

Source

R

Release History