BioConductor

genomeIntervals 1.36.0

Operations on genomic intervals

Released Apr 5, 2017 by Julien Gagneur

This package can be loaded by Renjin but 11 out 15 tests failed.

Dependencies

GenomeInfoDb 1.16.0 IRanges 2.14.10 S4Vectors 0.18.3 BiocGenerics 0.26.0 GenomicRanges 1.32.6 intervals 0.15.1

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>genomeIntervals</artifactId>
    <version>1.36.0-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:genomeIntervals')

Test Results

This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.