BioConductor
genotypeeval 1.12.0
QA/QC of a gVCF or VCF file
Released May 1, 2018 by Jennifer Tom
This package cannot yet be used with Renjin it depends on other packages which are not available: rtracklayer 1.40.5 and VariantAnnotation 1.26.1
Dependencies
rtracklayer 1.40.5 VariantAnnotation 1.26.1 ggplot2 3.0.0 GenomeInfoDb 1.16.0 GenomicRanges 1.32.6 BiocGenerics 0.26.0 IRanges 2.14.10 BiocParallel 1.14.2 Rtsne 0.13
Takes in a gVCF or VCF and reports metrics to assess quality of calls.