BioConductor
gep2pep 1.0.0
Creation and Analysis of Pathway Expression Profiles (PEPs)
Released Sep 11, 2017 by Francesco Napolitano
This package cannot yet be used with Renjin it depends on other packages which are not available: Biobase 2.40.0 and GSEABase 1.42.0
An older version of this package is
more compatible with Renjin.
Dependencies
Biobase 2.40.0 GSEABase 1.42.0 foreach 1.4.4 repo 2.1.3 XML 3.98-1.11
Pathway Expression Profiles (PEPs) are based on the expression of pathways (defined as sets of genes) as opposed to individual genes. This package converts gene expression profiles to PEPs and performs enrichment analysis of both pathways and experimental conditions, such as "drug set enrichment analysis" and "gene2drug" drug discovery analysis respectively.