BioConductor
gespeR 1.12.0
Gene-Specific Phenotype EstimatoR
Released Jul 22, 2015 by Fabian Schmich
This package cannot yet be used with Renjin it depends on other packages which are not available: cellHTS2 2.44.0 and dplyr 0.7.6
Dependencies
cellHTS2 2.44.0 dplyr 0.7.6 ggplot2 3.0.0 Biobase 2.40.0 biomaRt 2.36.1 glmnet 2.0-16 foreach 1.4.4 doParallel 1.0.11 reshape2 1.4.3 Matrix 1.2-14
Estimates gene-specific phenotypes from off-target confounded RNAi screens. The phenotype of each siRNA is modeled based on on-targeted and off-targeted genes, using a regularized linear regression model.