BioConductor

globalSeq 1.8.0

Testing for association between RNA-Seq and high-dimensional data

Released May 1, 2018 by Armin Rauschenberger

This package can be loaded by Renjin but 2 out 3 tests failed.

The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>globalSeq</artifactId>
    <version>1.8.0-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:globalSeq')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.