BioConductor

globaltest 5.34.1

Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

This package can be loaded by Renjin but 5 out 9 tests failed.

Dependencies

annotate 1.58.0 AnnotationDbi 1.42.1 survival 2.43-1 Biobase 2.40.0

The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>globaltest</artifactId>
    <version>5.34.1-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:globaltest')

Test Results

This package was last tested against Renjin 0.9.2709 on Nov 8, 2018.