BioConductor

goProfiles 1.42.0

goProfiles: an R package for the statistical analysis of functional profiles

Released Apr 20, 2018 by Alex Sanchez

Dependencies

GO.db 3.6.0 AnnotationDbi 1.42.0 Biobase 2.40.0 stringr 1.3.0 CompQuadForm 1.4.3

The package implements methods to compare lists of genes based on comparing the corresponding 'functional profiles'.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>goProfiles</artifactId>
    <version>1.42.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:goProfiles')

Test Results

This package was last tested against Renjin 0.9.2643 on May 4, 2018.

• CD4ids-examples
• GOTermsList-examples
• basicProfile-examples
• compSummary-examples
• compareGOProfiles-examples
• compareGeneLists-examples
• compareProfilesLists-examples
• contractedProfile.rd
• conversionFunctions-examples
• drosophila-examples
• equivClust2pdf-examples
• equivSummary-examples
• equivalentGOProfiles-examples
• expandedLevel-examples
• expandedProfile-examples
• fisherGOProfiles-examples
• fitGOProfile-examples
• hugoIds-examples
• mergeProfilesLists-examples
• ngenes.rd
• omimIds-examples
• plotProfiles-examples
• printProfiles-examples
• prostateIds-examples

Source

Release History

• 1.42.0
• 1.41.1
• 1.41.0
• 1.38.0
• 1.34.0
• 1.32.0
• 1.30.0