BioConductor

maPredictDSC 1.18.0

Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge

Released Jun 27, 2013 by Adi Laurentiu Tarca

This package cannot yet be used with Renjin it depends on other packages which are not available: hgu133plus2.db 3.2.3 and caret 6.0-80

Dependencies

caret 6.0-80 hgu133plus2.db 3.2.3 affy 1.58.0 AnnotationDbi 1.42.1 e1071 1.7-0 gcrma 2.52.0 ROCR 1.0-7 LungCancerACvsSCCGEO 1.16.0 MASS 7.3-50 limma 3.36.2 ROC 1.56.0 class 7.3-14

This package implements the classification pipeline of the best overall team (Team221) in the IMPROVER Diagnostic Signature Challenge. Additional functionality is added to compare 27 combinations of data preprocessing, feature selection and classifier types.

Source

R

Release History