BioConductor

messina 1.16.0

Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems.

Released Mar 20, 2014 by Mark Pinese

This package can be loaded by Renjin but all tests failed.

Dependencies

ggplot2 3.0.0 survival 2.42-6 foreach 1.4.4 Rcpp plyr 1.8.4

Messina is a collection of algorithms for constructing optimally robust single-gene classifiers, and for identifying differential expression in the presence of outliers or unknown sample subgroups. The methods have application in identifying lead features to develop into clinical tests (both diagnostic and prognostic), and in identifying differential expression when a fraction of samples show unusual patterns of expression.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>messina</artifactId>
    <version>1.16.0-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:messina')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 26, 2018.

Source

R
C
C++

Release History