BioConductor

metaX 1.4.2

An R package for metabolomic data analysis

Released Feb 10, 2015 by Bo Wen

This package cannot yet be used with Renjin it depends on other packages which are not available: dplyr 0.7.6, DiffCorr 0.4.1, xcms 3.2.0, caret 6.0-80, mixOmics 6.3.2, faahKO 1.20.0, tidyr 0.8.1, CAMERA 1.36.0, and data.table 1.11.4

Dependencies

tidyr 0.8.1 DiffCorr 0.4.1 mixOmics 6.3.2 data.table 1.11.4 caret 6.0-80 faahKO 1.20.0 dplyr 0.7.6 xcms 3.2.0 CAMERA 1.36.0 RCurl missForest 1.4 DiscriMiner 0.1-29 lattice 0.20-35 igraph 1.2.2 vsn 3.48.1 ape 5.1 impute 1.54.0 pls 2.7-0 preprocessCore 1.42.0 pROC 1.12.1 pheatmap 1.0.10 VennDiagram 1.6.20 bootstrap 2017.2 BBmisc 1.11 Nozzle.R1 1.1-1 RColorBrewer 1.1-2 stringr 1.3.1 scatterplot3d 0.3-41 plyr 1.8.4 reshape2 1.4.3 ggplot2 3.0.0 scales 1.0.0 boot 1.3-20 SSPA 2.20.0 pcaMethods 1.72.0 doParallel 1.0.11

The package provides a integrated pipeline for mass spectrometry- based metabolomic data analysis. It includes the stages peak detection, data preprocessing, normalization, missing value imputation, univariate statistical analysis, multivariate statistical analysis such as PCA and PLS-DA, metabolite identification, pathway analysis, power analysis, feature selection and modeling, data quality assessment.

Source

R

Release History