BioConductor
methylKit 1.6.3
DNA methylation analysis from high-throughput bisulfite sequencing results
This version has not yet been built and tested against Renjin. Please allow a few days for the package to be built.
methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing. It also has functions to analyze base-pair resolution 5hmC data from experimental protocols such as oxBS-Seq and TAB-Seq. Perl is needed to read SAM files only.