BioConductor

methylMnM 1.18.0

detect different methylation level (DMR)

Released Apr 8, 2013 by Yan Zhou

This package can be loaded by Renjin but 4 out 18 tests failed.

Dependencies

edgeR 3.22.2 statmod 1.4.30

To give the exactly p-value and q-value of MeDIP-seq and MRE-seq data for different samples comparation.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>methylMnM</artifactId>
    <version>1.18.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:methylMnM')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.