BioConductor
methylPipe 1.14.0
Base resolution DNA methylation data analysis
Released Mar 16, 2016 by Kamal Kishore
This package cannot yet be used with Renjin it depends on other packages which are not available: Gviz 1.24.0 and data.table 1.11.4
Dependencies
data.table 1.11.4 Gviz 1.24.0 GenomeInfoDb 1.16.0 S4Vectors 0.18.3 SummarizedExperiment 1.10.1 Rsamtools 1.32.3 marray 1.58.0 GenomicAlignments 1.16.0 Biostrings 2.48.0 GenomicRanges 1.32.6 BiocGenerics 0.26.0 IRanges 2.14.10 gplots 3.0.1
Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.