BioConductor

miRNAmeConverter 1.8.0

Convert miRNA Names to Different miRBase Versions

Released May 1, 2018 by Stefan J. Haunsberger

This package can be loaded by Renjin but all tests failed.

Dependencies

AnnotationDbi 1.42.1 miRBaseVersions.db 1.1.0 DBI 1.0.0 reshape2 1.4.3

Translating mature miRNA names to different miRBase versions, sequence retrieval, checking names for validity and detecting miRBase version of a given set of names (data from http://www.mirbase.org/).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>miRNAmeConverter</artifactId>
    <version>1.8.0-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:miRNAmeConverter')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 26, 2018.