BioConductor

mmnet 1.13.0

A metagenomic pipeline for systems biology

Released Jul 15, 2014 by Yang Cao

This package cannot yet be used with Renjin it depends on other packages which are not available: flexmix 2.3-14

Dependencies

flexmix 2.3-14 RCurl biom 0.3.12 XML 3.98-1.16 stringr 1.3.1 KEGGREST 1.20.1 plyr 1.8.4 igraph 1.2.2 reshape2 1.4.3 RJSONIO 1.3-0 Matrix 1.2-14 Biobase 2.40.0 ggplot2 3.0.0

This package gives the implementations microbiome metabolic network constructing and analyzing. It introduces a unique metagenomic systems biology approach, mapping metagenomic data to the KEGG global metabolic pathway and constructing a systems-level network. The system-level network and the next topological analysis will be of great help to analysis the various functional properties, including regulation and metabolic functionality of the metagenome.

Source

R

Release History