BioConductor
mosaics 2.18.0
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
Released Mar 15, 2016 by Dongjun Chung
This package cannot yet be used with Renjin it depends on other packages which are not available: GenomicAlignments 1.16.0
An older version of this package is
more compatible with Renjin.
Dependencies
GenomicAlignments 1.16.0 IRanges 2.14.10 GenomeInfoDb 1.16.0 MASS 7.3-50 GenomicRanges 1.32.3 lattice 0.20-35 Rcpp S4Vectors 0.18.2 Rsamtools 1.32.0
This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.