BioConductor
motifmatchr 1.2.0
Fast Motif Matching in R
Released Mar 8, 2017 by Alicia Schep
This package cannot yet be used with Renjin it depends on other packages which are not available: TFBSTools 1.18.0 and BSgenome 1.48.0
Dependencies
BSgenome 1.48.0 TFBSTools 1.18.0 RcppArmadillo 0.9.100.5.0 GenomeInfoDb 1.16.0 Biostrings 2.48.0 GenomicRanges 1.32.6 IRanges 2.14.10 Rcpp S4Vectors 0.18.3 SummarizedExperiment 1.10.1 Rsamtools 1.32.3 Matrix 1.2-14
Quickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, which was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki.