BioConductor

msd16s 0.114.0

Healthy and moderate to severe diarrhea 16S expression data

Released May 1, 2018 by Joseph N. Paulson

This package is available for Renjin and there are no known compatibility issues.

Dependencies

metagenomeSeq 1.22.0 Biobase 2.40.0

Gut 16S sequencing expression data from 992 healthy and moderate-to-severe diarrhetic samples used in 'Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition'.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>msd16s</artifactId>
    <version>0.114.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:msd16s')

Test Results

This package was last tested against Renjin 0.9.2643 on May 4, 2018.

Source

R

Release History