BioConductor
muscle 3.22.0
Multiple Sequence Alignment with MUSCLE
Released Oct 5, 2012 by Alex T. Kalinka
This package can be loaded by Renjin but there was an error compiling C/FORTRAN sources and 1 out 2 tests failed.
An older version of this package is
more compatible with Renjin.
Dependencies
MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.bioconductor</groupId>
<artifactId>muscle</artifactId>
<version>3.22.0-b1</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.bioconductor:muscle')
Test Results
This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.