BioConductor

ndexr 1.2.0

NDEx R client library

Released Apr 27, 2018 by Florian Auer

This package can be loaded by Renjin but 26 out 97 tests failed.

Dependencies

plyr 1.8.4 httr 1.3.1 igraph 1.2.1 jsonlite 1.5 tidyr 0.8.0

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>ndexr</artifactId>
    <version>1.2.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:ndexr')

Test Results

This package was last tested against Renjin 0.9.2643 on May 4, 2018.

Source

R

Release History