BioConductor

nucleoSim 1.8.0

Generate synthetic nucleosome maps

Released Jul 24, 2015 by Astrid Deschenes

This package can be loaded by Renjin but 7 out 9 tests failed.

Dependencies

This package can generate a synthetic map with reads covering the nucleosome regions as well as a synthetic map with forward and reverse reads emulating next-generation sequencing. The user has choice between three different distributions for the read positioning: Normal, Student and Uniform.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>nucleoSim</artifactId>
    <version>1.8.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:nucleoSim')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.