BioConductor
qrqc 1.34.0
Quick Read Quality Control
Released Apr 17, 2012 by Vince Buffalo
This package cannot yet be used with Renjin it depends on other packages which are not available: biovizBase 1.28.2
Dependencies
biovizBase 1.28.2 ggplot2 3.0.0 Biostrings 2.48.0 reshape 0.8.7 plyr 1.8.4 Rsamtools 1.32.3 testthat 2.0.0 brew 1.0-6 xtable 1.8-2
Quickly scans reads and gathers statistics on base and quality frequencies, read length, k-mers by position, and frequent sequences. Produces graphical output of statistics for use in quality control pipelines, and an optional HTML quality report. S4 SequenceSummary objects allow specific tests and functionality to be written around the data collected.