BioConductor

trena 1.2.0

Fit transcriptional regulatory networks using gene expression, priors, machine learning

Released Apr 25, 2018 by Paul Shannon

Dependencies

MotifDb 1.22.0 BSgenome.Hsapiens.UCSC.hg38 1.4.1 BSgenome.Mmusculus.UCSC.mm10 1.4.0 BSgenome 1.48.0 BSgenome.Hsapiens.UCSC.hg19 1.4.0 RPostgreSQL BiocParallel 1.14.2 DBI 1.0.0 flare 1.6.0 AnnotationDbi 1.42.1 randomForest 4.6-14 RSQLite Biostrings 2.48.0 GenomicRanges 1.32.6 biomaRt 2.36.1 glmnet 2.0-16 org.Hs.eg.db 3.6.0 lassopv 0.2.0 vbsr 0.0.5

Methods for reconstructing transcriptional regulatory networks, especially in species for which genome-wide TF binding site information is available.

Source

Release History

• 1.2.0
• 1.1.20
• 1.1.19
• 1.1.18
• 1.1.17
• 1.1.16
• 1.1.15
• 1.1.14
• 1.1.13
• 1.1.12
• 1.1.10
• 1.1.7
• 1.1.5