BioConductor

tweeDEseq 1.26.0

RNA-seq data analysis using the Poisson-Tweedie family of distributions

Released Apr 30, 2018 by Juan R Gonzalez

This package can be loaded by Renjin but 2 out 13 tests failed.

Dependencies

limma 3.36.1 MASS 7.3-50 edgeR 3.22.2 cqn 1.26.0

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>tweeDEseq</artifactId>
    <version>1.26.0-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:tweeDEseq')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.