CRAN

ABC.RAP 0.9.0

Array Based CpG Region Analysis Pipeline

Released Oct 20, 2016 by Abdulmonem Alsaleh [cre, aut], Robert Weeks [aut], Ian Morison [aut], RStudio [ctb]

This package can be loaded by Renjin but 2 out 6 tests failed.

It aims to identify candidate genes that are “differentially methylated” between cases and controls. It applies Student’s t-test and delta beta analysis to identify candidate genes containing multiple “CpG sites”.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>ABC.RAP</artifactId>
    <version>0.9.0-b7</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:ABC.RAP')

Test Results

This package was last tested against Renjin 0.8.2442 on Sep 25, 2017.

Source

R

View GitHub Mirror

Release History