CRAN

ACNE 0.8.1

Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization

Released Oct 27, 2015 by Maria Ortiz [aut], Henrik Bengtsson [aut, cre, cph], Angel Rubio [aut]

This package cannot yet be used with Renjin it depends on other packages which are not available: aroma.affymetrix 3.1.0, R.utils 2.6.0, R.methodsS3 1.7.1, R.oo 1.21.0, R.filesets 2.11.0, and aroma.core 3.1.1

Dependencies

R.filesets 2.11.0 R.utils 2.6.0 aroma.affymetrix 3.1.0 aroma.core 3.1.1 R.oo 1.21.0 R.methodsS3 1.7.1 MASS 7.3-47 matrixStats 0.52.2

A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).

Source

R

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