CRAN

ACNE 0.8.1

Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization

Released Oct 27, 2015 by Henrik Bengtsson

This package cannot yet be used with Renjin it depends on other packages which are not available: R.filesets 2.12.1, R.utils 2.6.0, aroma.affymetrix 3.1.1, R.oo 1.22.0, and aroma.core 3.1.2

Dependencies

R.filesets 2.12.1 R.utils 2.6.0 aroma.affymetrix 3.1.1 aroma.core 3.1.2 R.oo 1.22.0 MASS 7.3-49 matrixStats 0.53.1 R.methodsS3 1.7.1

A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).

Source

R

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