CRAN

ASICS 1.0.1

Automatic Statistical Identification in Complex Spectra

Released Jan 23, 2018 by Gaëlle Lefort

This package can be loaded by Renjin but no tests could be found for the package.

Dependencies

foreach 1.4.4 ggplot2 2.2.1 quadprog 1.5-5 plyr 1.8.4 doParallel 1.0.11 zoo 1.8-1

With a set of pure metabolite spectra, ASICS quantifies metabolites concentration in a complex spectrum. The identification of metabolites is performed by fitting a mixture model to the spectra of the library with a sparse penalty. The method and its statistical properties are described in Tardivel et al. (2017) .

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>ASICS</artifactId>
    <version>1.0.1-b4</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:ASICS')

Source

R

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Release History