CRAN

ASMap 1.0-2

Linkage Map Construction using the MSTmap Algorithm

Released Sep 14, 2017 by Julian Taylor, David Butler

This package can be loaded by Renjin but 14 out 23 tests failed.

Dependencies

lattice 0.20-35 qtl 1.41-6 RColorBrewer 1.1-2 gtools 3.5.0 fields 9.0

Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred 'R/qtl' objects. This includes extremely fast linkage map clustering and optimal marker ordering using 'MSTmap' (see Wu et al.,2008).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>ASMap</artifactId>
    <version>1.0-2-b9</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:ASMap')

Test Results

This package was last tested against Renjin 0.8.2523 on Nov 12, 2017.