CRAN

ASMap 1.0-0

Linkage Map Construction using the MSTmap Algorithm

Released Jul 11, 2017 by Julian Taylor, David Butler

This package can be loaded by Renjin but there was an error compiling C/FORTRAN sources and 15 out 24 tests failed.

Dependencies

qtl 1.41-6 gtools 3.5.0 lattice 0.20-35 RColorBrewer 1.1-2 fields 9.0

Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred 'R/qtl' objects. This includes extremely fast linkage map clustering and optimal marker ordering using 'MSTmap' (see Wu et al.,2008).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>ASMap</artifactId>
    <version>1.0-0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:ASMap')

Test Results

This package was last tested against Renjin 0.8.2413 on Jul 13, 2017.