CRAN

AdhereR 0.1.0

Adherence to Medications

Released Apr 27, 2017 by Dan Dediu [aut, cre], Alexandra Dima [aut]

This package cannot yet be used with Renjin because there was a problem building the package using Renjin's toolchain. View Build Log
FreeMarker template error (DEBUG mode; use RETHROW in production!): An error has occurred when reading existing sub-variable "dependencies"; see cause exception! The type of the containing value was: extended_hash+string (org.renjin.ci.packages.PackageVersionPage wrapped into f.e.b.StringModel) ---- FTL stack trace ("~" means nesting-related): - Failed at: #if (version.dependencies?size > 0) [in template "packageVersion.ftl" at line 81, column 9] ~ Reached through: #nested [in template "base.ftl" in macro "scaffolding" at line 67, column 3] ~ Reached through: @scaffolding title="${version.package... [in template "packageVersion.ftl" at line 4, column 1] ---- Java stack trace (for programmers): ---- freemarker.core._TemplateModelException: [... Exception message was already printed; see it above ...] at freemarker.ext.beans.BeanModel.get(BeanModel.java:199) at freemarker.core.Dot._eval(Dot.java:40) at freemarker.core.Expression.eval(Expression.java:78) at freemarker.core.BuiltInsForMultipleTypes$sizeBI._eval(BuiltInsForMultipleTypes.java:432) at freemarker.core.Expression.eval(Expression.java:78) at freemarker.core.EvalUtil.compare(EvalUtil.java:110) at freemarker.core.ComparisonExpression.evalToBoolean(ComparisonExpression.java:64) at freemarker.core.ParentheticalExpression.evalToBoolean(ParentheticalExpression.java:31) at freemarker.core.ConditionalBlock.accept(ConditionalBlock.java:46) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.MixedContent.accept(MixedContent.java:54) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.Environment.invokeNestedContent(Environment.java:546) at freemarker.core.BodyInstruction.accept(BodyInstruction.java:56) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.MixedContent.accept(MixedContent.java:54) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.Macro$Context.runMacro(Macro.java:184) at freemarker.core.Environment.invoke(Environment.java:701) at freemarker.core.UnifiedCall.accept(UnifiedCall.java:84) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.MixedContent.accept(MixedContent.java:54) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.Environment.process(Environment.java:302) at freemarker.template.Template.process(Template.java:323) at org.glassfish.jersey.server.mvc.freemarker.FreemarkerViewProcessor.writeTo(FreemarkerViewProcessor.java:127) at org.glassfish.jersey.server.mvc.freemarker.FreemarkerViewProcessor.writeTo(FreemarkerViewProcessor.java:77) at org.glassfish.jersey.server.mvc.spi.ResolvedViewable.writeTo(ResolvedViewable.java:116) at org.glassfish.jersey.server.mvc.internal.ViewableMessageBodyWriter.writeTo(ViewableMessageBodyWriter.java:134) at org.glassfish.jersey.server.mvc.internal.ViewableMessageBodyWriter.writeTo(ViewableMessageBodyWriter.java:88) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.invokeWriteTo(WriterInterceptorExecutor.java:265) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.aroundWriteTo(WriterInterceptorExecutor.java:250) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.server.internal.JsonWithPaddingInterceptor.aroundWriteTo(JsonWithPaddingInterceptor.java:106) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.server.mvc.internal.TemplateMethodInterceptor.aroundWriteTo(TemplateMethodInterceptor.java:77) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.server.internal.MappableExceptionWrapperInterceptor.aroundWriteTo(MappableExceptionWrapperInterceptor.java:86) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.message.internal.MessageBodyFactory.writeTo(MessageBodyFactory.java:1128) at org.glassfish.jersey.server.ServerRuntime$Responder.writeResponse(ServerRuntime.java:664) at org.glassfish.jersey.server.ServerRuntime$Responder.processResponse(ServerRuntime.java:421) at org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:411) at org.glassfish.jersey.server.ServerRuntime$2.run(ServerRuntime.java:308) at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) at org.glassfish.jersey.internal.Errors.process(Errors.java:315) at org.glassfish.jersey.internal.Errors.process(Errors.java:297) at org.glassfish.jersey.internal.Errors.process(Errors.java:267) at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:317) at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:288) at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1110) at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:401) at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:386) at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:335) at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:222) at org.mortbay.jetty.servlet.ServletHolder.handle(ServletHolder.java:511) at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1166) at com.google.apphosting.utils.servlet.ParseBlobUploadFilter.doFilter(ParseBlobUploadFilter.java:125) at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1157) at com.google.apphosting.runtime.jetty.SaveSessionFilter.doFilter(SaveSessionFilter.java:37) at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1157) at com.google.apphosting.utils.servlet.JdbcMySqlConnectionCleanupFilter.doFilter(JdbcMySqlConnectionCleanupFilter.java:60) at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1157) at com.google.apphosting.utils.servlet.TransactionCleanupFilter.doFilter(TransactionCleanupFilter.java:48) at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1157) at org.mortbay.jetty.servlet.ServletHandler.handle(ServletHandler.java:388) at org.mortbay.jetty.security.SecurityHandler.handle(SecurityHandler.java:216) at org.mortbay.jetty.servlet.SessionHandler.handle(SessionHandler.java:182) at org.mortbay.jetty.handler.ContextHandler.handle(ContextHandler.java:765) at org.mortbay.jetty.webapp.WebAppContext.handle(WebAppContext.java:418) at com.google.apphosting.runtime.jetty.AppVersionHandlerMap.handle(AppVersionHandlerMap.java:257) at org.mortbay.jetty.handler.HandlerWrapper.handle(HandlerWrapper.java:152) at org.mortbay.jetty.Server.handle(Server.java:326) at org.mortbay.jetty.HttpConnection.handleRequest(HttpConnection.java:542) at org.mortbay.jetty.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:923) at com.google.apphosting.runtime.jetty.RpcRequestParser.parseAvailable(RpcRequestParser.java:76) at org.mortbay.jetty.HttpConnection.handle(HttpConnection.java:404) at com.google.apphosting.runtime.jetty.JettyServletEngineAdapter.serviceRequest(JettyServletEngineAdapter.java:146) at com.google.apphosting.runtime.JavaRuntime$RequestRunnable.dispatchServletRequest(JavaRuntime.java:657) at com.google.apphosting.runtime.JavaRuntime$RequestRunnable.dispatchRequest(JavaRuntime.java:619) at com.google.apphosting.runtime.JavaRuntime$RequestRunnable.run(JavaRuntime.java:589) at com.google.tracing.TraceContext$TraceContextRunnable.runInContext(TraceContext.java:453) at com.google.tracing.TraceContext$TraceContextRunnable$1.run(TraceContext.java:460) at com.google.tracing.CurrentContext.runInContext(CurrentContext.java:293) at com.google.tracing.TraceContext$AbstractTraceContextCallback.runInInheritedContextNoUnref(TraceContext.java:319) at com.google.tracing.TraceContext$AbstractTraceContextCallback.runInInheritedContext(TraceContext.java:311) at com.google.tracing.TraceContext$TraceContextRunnable.run(TraceContext.java:457) at com.google.apphosting.runtime.ThreadGroupPool$PoolEntry.run(ThreadGroupPool.java:263) at java.lang.Thread.run(Thread.java:745) Caused by: java.lang.reflect.InvocationTargetException at com.google.appengine.runtime.Request.process-c08bb803fafe1393(Request.java) at sun.reflect.GeneratedMethodAccessor60.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:42) at freemarker.ext.beans.BeansWrapper.invokeMethod(BeansWrapper.java:1458) at freemarker.ext.beans.BeanModel.invokeThroughDescriptor(BeanModel.java:255) at freemarker.ext.beans.BeanModel.get(BeanModel.java:159) at freemarker.core.Dot._eval(Dot.java:40) at freemarker.core.Expression.eval(Expression.java:78) at freemarker.core.BuiltInsForMultipleTypes$sizeBI._eval(BuiltInsForMultipleTypes.java:432) at freemarker.core.Expression.eval(Expression.java:78) at freemarker.core.EvalUtil.compare(EvalUtil.java:110) at freemarker.core.ComparisonExpression.evalToBoolean(ComparisonExpression.java:64) at freemarker.core.ParentheticalExpression.evalToBoolean(ParentheticalExpression.java:31) at freemarker.core.ConditionalBlock.accept(ConditionalBlock.java:46) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.MixedContent.accept(MixedContent.java:54) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.Environment.invokeNestedContent(Environment.java:546) at freemarker.core.BodyInstruction.accept(BodyInstruction.java:56) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.MixedContent.accept(MixedContent.java:54) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.Macro$Context.runMacro(Macro.java:184) at freemarker.core.Environment.invoke(Environment.java:701) at freemarker.core.UnifiedCall.accept(UnifiedCall.java:84) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.MixedContent.accept(MixedContent.java:54) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.Environment.process(Environment.java:302) at freemarker.template.Template.process(Template.java:323) at org.glassfish.jersey.server.mvc.freemarker.FreemarkerViewProcessor.writeTo(FreemarkerViewProcessor.java:127) at org.glassfish.jersey.server.mvc.freemarker.FreemarkerViewProcessor.writeTo(FreemarkerViewProcessor.java:77) at org.glassfish.jersey.server.mvc.spi.ResolvedViewable.writeTo(ResolvedViewable.java:116) at org.glassfish.jersey.server.mvc.internal.ViewableMessageBodyWriter.writeTo(ViewableMessageBodyWriter.java:134) at org.glassfish.jersey.server.mvc.internal.ViewableMessageBodyWriter.writeTo(ViewableMessageBodyWriter.java:88) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.invokeWriteTo(WriterInterceptorExecutor.java:265) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.aroundWriteTo(WriterInterceptorExecutor.java:250) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.server.internal.JsonWithPaddingInterceptor.aroundWriteTo(JsonWithPaddingInterceptor.java:106) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.server.mvc.internal.TemplateMethodInterceptor.aroundWriteTo(TemplateMethodInterceptor.java:77) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.server.internal.MappableExceptionWrapperInterceptor.aroundWriteTo(MappableExceptionWrapperInterceptor.java:86) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.message.internal.MessageBodyFactory.writeTo(MessageBodyFactory.java:1128) at org.glassfish.jersey.server.ServerRuntime$Responder.writeResponse(ServerRuntime.java:664) at org.glassfish.jersey.server.ServerRuntime$Responder.processResponse(ServerRuntime.java:421) at org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:411) at org.glassfish.jersey.server.ServerRuntime$2.run(ServerRuntime.java:308) at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) at org.glassfish.jersey.internal.Errors.process(Errors.java:315) at org.glassfish.jersey.internal.Errors.process(Errors.java:297) at org.glassfish.jersey.internal.Errors.process(Errors.java:267) at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:317) at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:288) at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1110) at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:401) at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:386) at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:335) at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:222) at org.mortbay.jetty.servlet.ServletHolder.handle(ServletHolder.java:511) at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1166) at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1157) at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1157) at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1157) at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1157) at org.mortbay.jetty.servlet.ServletHandler.handle(ServletHandler.java:388) at org.mortbay.jetty.security.SecurityHandler.handle(SecurityHandler.java:216) at org.mortbay.jetty.servlet.SessionHandler.handle(SessionHandler.java:182) at org.mortbay.jetty.handler.ContextHandler.handle(ContextHandler.java:765) at org.mortbay.jetty.webapp.WebAppContext.handle(WebAppContext.java:418) at org.mortbay.jetty.handler.HandlerWrapper.handle(HandlerWrapper.java:152) at org.mortbay.jetty.Server.handle(Server.java:326) at org.mortbay.jetty.HttpConnection.handleRequest(HttpConnection.java:542) at org.mortbay.jetty.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:923) at org.mortbay.jetty.HttpConnection.handle(HttpConnection.java:404) at com.google.tracing.TraceContext$TraceContextRunnable.runInContext(TraceContext.java:453) at com.google.tracing.TraceContext$TraceContextRunnable$1.run(TraceContext.java:460) at com.google.tracing.CurrentContext.runInContext(CurrentContext.java:293) at com.google.tracing.TraceContext$AbstractTraceContextCallback.runInInheritedContextNoUnref(TraceContext.java:319) at com.google.tracing.TraceContext$AbstractTraceContextCallback.runInInheritedContext(TraceContext.java:311) at com.google.tracing.TraceContext$TraceContextRunnable.run(TraceContext.java:457) ... 1 more Caused by: java.lang.IllegalStateException: Package entity does not exist: org.renjin.cran:manipulate at org.renjin.ci.datastore.PackageDatabase.getPackageOf(PackageDatabase.java:270) at org.renjin.ci.packages.PackageVersionPage.getDependencies(PackageVersionPage.java:131) ... 84 more