CRAN

AdhereR 0.1.0

Adherence to Medications

Released Apr 27, 2017 by Dan Dediu [aut, cre], Alexandra Dima [aut]

This package can be loaded by Renjin but 10 out 12 tests failed.
FreeMarker template error (DEBUG mode; use RETHROW in production!): An error has occurred when reading existing sub-variable "dependencies"; see cause exception! The type of the containing value was: extended_hash+string (org.renjin.ci.packages.PackageVersionPage wrapped into f.e.b.StringModel) ---- FTL stack trace ("~" means nesting-related): - Failed at: #if (version.dependencies?size > 0) [in template "packageVersion.ftl" at line 93, column 9] ~ Reached through: #nested [in template "base.ftl" in macro "scaffolding" at line 67, column 3] ~ Reached through: @scaffolding title="${version.package... [in template "packageVersion.ftl" at line 4, column 1] ---- Java stack trace (for programmers): ---- freemarker.core._TemplateModelException: [... Exception message was already printed; see it above ...] at freemarker.ext.beans.BeanModel.get(BeanModel.java:199) at freemarker.core.Dot._eval(Dot.java:40) at freemarker.core.Expression.eval(Expression.java:78) at freemarker.core.BuiltInsForMultipleTypes$sizeBI._eval(BuiltInsForMultipleTypes.java:432) at freemarker.core.Expression.eval(Expression.java:78) at freemarker.core.EvalUtil.compare(EvalUtil.java:110) at freemarker.core.ComparisonExpression.evalToBoolean(ComparisonExpression.java:64) at freemarker.core.ParentheticalExpression.evalToBoolean(ParentheticalExpression.java:31) at freemarker.core.ConditionalBlock.accept(ConditionalBlock.java:46) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.MixedContent.accept(MixedContent.java:54) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.Environment.invokeNestedContent(Environment.java:546) at freemarker.core.BodyInstruction.accept(BodyInstruction.java:56) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.MixedContent.accept(MixedContent.java:54) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.Macro$Context.runMacro(Macro.java:184) at freemarker.core.Environment.invoke(Environment.java:701) at freemarker.core.UnifiedCall.accept(UnifiedCall.java:84) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.MixedContent.accept(MixedContent.java:54) at freemarker.core.Environment.visit(Environment.java:324) at freemarker.core.Environment.process(Environment.java:302) at freemarker.template.Template.process(Template.java:323) at org.glassfish.jersey.server.mvc.freemarker.FreemarkerViewProcessor.writeTo(FreemarkerViewProcessor.java:127) at org.glassfish.jersey.server.mvc.freemarker.FreemarkerViewProcessor.writeTo(FreemarkerViewProcessor.java:77) at org.glassfish.jersey.server.mvc.spi.ResolvedViewable.writeTo(ResolvedViewable.java:116) at org.glassfish.jersey.server.mvc.internal.ViewableMessageBodyWriter.writeTo(ViewableMessageBodyWriter.java:134) at org.glassfish.jersey.server.mvc.internal.ViewableMessageBodyWriter.writeTo(ViewableMessageBodyWriter.java:88) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.invokeWriteTo(WriterInterceptorExecutor.java:265) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.aroundWriteTo(WriterInterceptorExecutor.java:250) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.server.internal.JsonWithPaddingInterceptor.aroundWriteTo(JsonWithPaddingInterceptor.java:106) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.server.mvc.internal.TemplateMethodInterceptor.aroundWriteTo(TemplateMethodInterceptor.java:77) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.server.internal.MappableExceptionWrapperInterceptor.aroundWriteTo(MappableExceptionWrapperInterceptor.java:86) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.message.internal.MessageBodyFactory.writeTo(MessageBodyFactory.java:1128) at org.glassfish.jersey.server.ServerRuntime$Responder.writeResponse(ServerRuntime.java:664) at org.glassfish.jersey.server.ServerRuntime$Responder.processResponse(ServerRuntime.java:421) at org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:411) at org.glassfish.jersey.server.ServerRuntime$2.run(ServerRuntime.java:308) at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) at org.glassfish.jersey.internal.Errors.process(Errors.java:315) at org.glassfish.jersey.internal.Errors.process(Errors.java:297) at org.glassfish.jersey.internal.Errors.process(Errors.java:267) at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:317) at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:288) at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1110) at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:401) at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:386) at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:335) at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:222) at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:848) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1772) at com.google.apphosting.utils.servlet.ParseBlobUploadFilter.doFilter(ParseBlobUploadFilter.java:125) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1759) at com.google.apphosting.runtime.jetty9.SaveSessionFilter.doFilter(SaveSessionFilter.java:37) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1759) at com.google.apphosting.utils.servlet.JdbcMySqlConnectionCleanupFilter.doFilter(JdbcMySqlConnectionCleanupFilter.java:60) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1759) at com.google.apphosting.utils.servlet.TransactionCleanupFilter.doFilter(TransactionCleanupFilter.java:48) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1759) at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:582) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143) at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:524) at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226) at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1180) at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:512) at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185) at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1112) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) at com.google.apphosting.runtime.jetty9.AppVersionHandlerMap.handle(AppVersionHandlerMap.java:297) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:134) at org.eclipse.jetty.server.Server.handle(Server.java:534) at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:320) at com.google.apphosting.runtime.jetty9.RpcConnection.handle(RpcConnection.java:202) at com.google.apphosting.runtime.jetty9.RpcConnector.serviceRequest(RpcConnector.java:81) at com.google.apphosting.runtime.jetty9.JettyServletEngineAdapter.serviceRequest(JettyServletEngineAdapter.java:108) at com.google.apphosting.runtime.JavaRuntime$RequestRunnable.dispatchServletRequest(JavaRuntime.java:680) at com.google.apphosting.runtime.JavaRuntime$RequestRunnable.dispatchRequest(JavaRuntime.java:642) at com.google.apphosting.runtime.JavaRuntime$RequestRunnable.run(JavaRuntime.java:612) at com.google.apphosting.runtime.JavaRuntime$NullSandboxRequestRunnable.run(JavaRuntime.java:806) at com.google.apphosting.runtime.ThreadGroupPool$PoolEntry.run(ThreadGroupPool.java:274) at java.lang.Thread.run(Thread.java:745) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.GeneratedMethodAccessor50.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at freemarker.ext.beans.BeansWrapper.invokeMethod(BeansWrapper.java:1458) at freemarker.ext.beans.BeanModel.invokeThroughDescriptor(BeanModel.java:255) at freemarker.ext.beans.BeanModel.get(BeanModel.java:159) ... 87 more Caused by: java.lang.IllegalStateException: Package entity does not exist: org.renjin.cran:manipulate at org.renjin.ci.datastore.PackageDatabase.getPackageOf(PackageDatabase.java:283) at org.renjin.ci.packages.PackageVersionPage.getDependencies(PackageVersionPage.java:164) ... 93 more