Automated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis
Released Feb 27, 2019 by Karam Daka
This package cannot yet be used with Renjin it depends on other packages which are not available: fgsea, org.Hs.eg.db, ConsensusClusterPlus, clusterProfiler, annotate, siggenes, and msigdbr 6.2.1
msigdbr 6.2.1 pamr 1.56 Rtsne 0.15 cluster 2.0.7-1 RColorBrewer 1.1-2
An unsupervised fully-automated pipeline for transcriptome analysis or a supervised option to identify characteristic genes from predefined subclasses. We rely on the 'pamr'