CRAN

DBGSA 1.2

methods of distance-based gene set functional enrichment analysis.

Released Jan 16, 2012 by Li Jin

This package is available for Renjin and there are no known compatibility issues.

Dependencies

fdrtool 1.2.15

This package provides methods and examples to support a method of Gene Set Analysis (GSA). DBGSA is a novel distance-based gene set enrichment analysis method. We consider that, the distance between 2 groups with different phenotype by focusing on the gene expression should be larger, if a certain gene functional set was significantly associated with a particular phenotype.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>DBGSA</artifactId>
    <version>1.2-b241</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:DBGSA')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

Source

R

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Release History