CRAN

DDRTree 0.1.5

Learning Principal Graphs with DDRTree

Released Apr 30, 2017 by Xiaojie Qiu

This package can be loaded by Renjin but there was an error compiling C/FORTRAN sources and all tests failed.

Dependencies

RcppEigen 0.3.3.4.0 irlba 2.3.2 Rcpp BH 1.66.0-1

Provides an implementation of the framework of reversed graph embedding (RGE) which projects data into a reduced dimensional space while constructs a principal tree which passes through the middle of the data simultaneously. DDRTree shows superiority to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic structure of the single cell genomics data. In general, it could be used to reconstruct the temporal progression as well as bifurcation structure of any datatype.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>DDRTree</artifactId>
    <version>0.1.5-b18</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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