CRAN
DIME 1.2
DIME (Differential Identification using Mixture Ensemble)
Released Dec 9, 2013 by Cenny Taslim
This package is available for Renjin and there are no known compatibility issues.
A robust differential identification method that considers an ensemble of finite mixture models combined with a local false discovery rate (fdr) to analyze ChIP-seq (high-throughput genomic)data comparing two samples allowing for flexible modeling of data.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>DIME</artifactId>
<version>1.2-b266</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:DIME')
Test Results
This package was last tested against Renjin 0.9.2644 on Jun 1, 2018.
- DIME-examples
- DIME.classify-examples
- DIME.plot.fit-examples
- gng.classify-examples
- gng.fit-examples
- gng.plot.comp-examples
- gng.plot.fit-examples
- gng.plot.mix-examples
- gng.plot.qq-examples
- inudge.classify-examples
- inudge.fit-examples
- inudge.plot.comp-examples
- inudge.plot.fit-examples
- inudge.plot.mix-examples
- inudge.plot.qq-examples
- nudge.classify-examples
- nudge.fit-examples
- nudge.plot.comp-examples
- nudge.plot.fit-examples
- nudge.plot.mix-examples
- nudge.plot.qq-examples