CRAN
DMRMark 1.1.1
DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data
Released Apr 21, 2017 by Linghao SHEN
This package cannot yet be used with Renjin it depends on other packages which are not available: MCMCpack 1.4-3
Dependencies
MCMCpack 1.4-3 mvtnorm 1.0-8 ellipse 0.4.1
Perform differential analysis for methylation array data. Detect differentially methylated regions (DMRs) from array M-values. The core is a Non-homogeneous Hidden Markov Model for estimating spatial correlation and a novel Constrained Gaussian Mixture Model for modeling the M-value pairs of each individual locus.