CRAN

DeLorean 1.5.0

Estimates Pseudotimes for Single Cell Expression Data

Released Oct 17, 2018 by John Reid

Dependencies

broom 0.5.0 rstan 2.18.1 dplyr 0.7.7 seriation 1.2-3 functional 0.6 lattice 0.20-35 rstantools 1.5.1 stringr 1.3.1 fastICA 1.2-1 Rcpp StanHeaders 2.18.0 kernlab 0.9-27 memoise 1.1.0 coda 0.19-2 ggplot2 3.0.0 reshape2 1.4.3 RcppEigen 0.3.3.4.0 MASS 7.3-51 BH 1.66.0-1

Implements the DeLorean model (Reid & Wernisch (2016) ) to estimate pseudotimes for single cell expression data. The DeLorean model uses a Gaussian process latent variable model to model uncertainty in the capture time of cross-sectional data.

Source

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Release History

• 1.5.0
• 1.4.1
• 1.3.0
• 1.2.5
• 1.2.4
• 1.2.3
• 1.2.2
• 1.2.0