CRAN

DrImpute 1.0

Imputing Dropout Events in Single-Cell RNA-Sequencing Data

Released Jul 15, 2017 by Il-Youp Kwak

This package can be loaded by Renjin but 1 out 4 tests failed.

Dependencies

R codes for imputing dropout events. Many statistical methods in cell type identification, visualization and lineage reconstruction do not account for dropout events ('PCAreduce', 'SC3', 'PCA', 't-SNE', 'Monocle', 'TSCAN', etc). 'DrImpute' can improve the performance of such software by imputing dropout events.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>DrImpute</artifactId>
    <version>1.0-b18</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:DrImpute')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

Source

C++

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