CRAN

GANPA 1.0

Gene Association Network-based Pathway Analysis

Released May 29, 2011 by Zhaoyuan Fang

This package is available for Renjin and there are no known compatibility issues.

Dependencies

This package implements a network-based gene weighting algorithm for pathways, as well as a gene-weighted gene set analysis approach for microarray data pathway analysis.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>GANPA</artifactId>
    <version>1.0-b243</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:GANPA')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

GSE.Test.Main-examples

Source

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