CRAN
GESTr 0.1
Gene Expression State Transformation
Released Mar 7, 2013 by Ed Curry
This package is available for Renjin and there are no known compatibility issues.
Dependencies
The Gene Expression State Transformation (GESTr) models the states of expression of genes across a compendium of samples in order to provide a universal scale of gene expression for all genes. TranSAM is a modification of the SAM approach designed to utilise GESTr-transformed gene expression data.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>GESTr</artifactId>
<version>0.1-b242</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:GESTr')
Test Results
This package was last tested against Renjin 0.9.2635 on Apr 26, 2018.