CRAN

GSAQ 1.0

Gene Set Analysis with QTL

Released Sep 8, 2016 by Samarendra Das

Computation of Quantitative Trait Loci hits in the selected gene set. Performing gene set validation with Quantitative Trait Loci information. Performing gene set enrichment analysis with available Quantitative Trait Loci data and computation of statistical significance value from gene set analysis. Obtaining the list of Quantitative Trait Loci hit genes along with their overlapped Quantitative Trait Loci names.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>GSAQ</artifactId>
    <version>1.0-b17</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:GSAQ')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 1, 2018.

• GSAQ-examples
• GSVQ-examples
• GeneSelect-examples
• genedist-examples
• genelist-examples
• geneqtl-examples
• qtl_salt-examples
• qtldist-examples
• qtlhit-examples
• rice_salt-examples
• totqtlhit-examples

Source

View GitHub Mirror

Release History

• 1.0