CRAN

GSAfisherCombined 1.0

Gene Set Analysis with Fisher Combined Method

Released Jun 24, 2018 by Carlos Garcia Prieto

Provides the p-value for a joint test of association between a phenotype and a set of genetic variants (SNPs) by combining marginal p-values using the Fisher method. See Fisher, R.A. (1925,ISBN:0-05-002170-2) Statistical Methods for Research Workers.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>GSAfisherCombined</artifactId>
    <version>1.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:GSAfisherCombined')

Test Results

This package was last tested against Renjin 0.9.2657 on Aug 18, 2018.

• GSAfisher.default-examples
• GSAfisher.multiple-examples
• GSAfisher.plot-examples
• GSAfisher.print-examples
• GSAfisher.summary-examples

Source

View GitHub Mirror

Release History

• 1.0